rs51803633 SNP Detail

Summary

• ID
  rs51803633
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153062220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTGAGGC TGCGGTCCAG
  AGATCCTTCT GGAATGTGCC ATATCCCCTC CCTCCACCCG CACCCCGCTA CACACAGCCG
  TTCTCTCCCG GGGTGGTCCT GGGCAGAACT CAGGTTGTAG ATATCAGCCA CCCCTTCCTC
  AAAACCGGAG GGGGCGAGGG AGTCTCAAGG GCACAGACAT CCATTCCAGT CACAGTTGGA
  S
  GCCCCTTCCA CTCTAGTCTA AAACACAGGC AAATTAACCA GGCTGAGGGG CCCAACAGGA
  TCGATCCTCT TCACTCTCAG GGTAACTTTT ATTCTGAGAT ACAGCACGTA TACATACCTC
  TGATTTTACT CACTTCTAAG CACACACACA CACACACACA CACACACACA CACACACACA
  CACACCAGGG TGACCCAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60822405	NES16493730	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51803633					SNP	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822405	NES16493730	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153062220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	7 bp distal
Lamc2	laminin, gamma 2	27 bp upstream
Rr13130	regulatory region 13130	781 bp proximal
Rr25076	regulatory region 25076	1772 bp proximal
Rr28719	regulatory region 28719	within coordinates
Tssr14250	transcription start site region 14250	418 bp upstream
Tssr14251	transcription start site region 14251	382 bp upstream
Tssr14252	transcription start site region 14252	352 bp upstream
Tssr14253	transcription start site region 14253	338 bp upstream
Tssr14254	transcription start site region 14254	319 bp upstream