rs51806072 SNP Detail

Summary

• ID
  rs51806072
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23792677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA AACTTGGTTT CAAGAACAAA
  G
  CAAAAATGTA AGCTACACCA TAATC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148061211	ENSMUSSNP1347034	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321489826	CHEV_5_23093497	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51806072					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23792677 () rs orientation: forward

Symbol	Name	Function Class
Rr117577	regulatory region 117577	477 bp distal
Rr117578	regulatory region 117578	724 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	847 bp downstream
Tssr50280	transcription start site region 50280	1052 bp upstream