rs51807757 SNP Detail

Summary

• ID
  rs51807757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56300341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATTATTT CACTGCCTAA
  TTTGGGGCTA AGAGGAGAGT TATACTGGGG ATGTATTCAG AAAACATTTG ATCGTGGCTC
  ATCTGCCACT CCGAATAGTA GAGTCTATCA AGTGGCTGAC AGTCTCCAAA TCAGAATTCC
  AAGGATGCTG TCATGTGGAG TCATTAAGAG GGGCACAGCT TCTTAGAATC TCCTTCAGCT
  Y
  CTCTGGATTT AAAGGAATTT ACAGGGAAAC TTCCAAGACA CCTTAGCTAT ATCCAAATGA
  AAGCCAAAGC ATTATAGTTT GGCAGGGCTG AAAGTGTGTC TCTGAAAGGG GGAAAAAATT
  GTATGAAGCT ACAGAGAAAA AAACGTCTGG GCATTAGCTT CTATTTCCTT TAAGGGATGG
  GAGAGTGCTC TGAGATTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52437175	NES15406601	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51807757					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52437175	NES15406601	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56300341 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	within coordinates
Gm25917	predicted gene, 25917	1112 bp upstream
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	941 bp distal
Rr267727	regulatory region 267727	141 bp distal
Rr267728	regulatory region 267728	660 bp proximal
Tssr113509	transcription start site region 113509	394 bp downstream
Tssr113510	transcription start site region 113510	344 bp downstream
Tssr113511	transcription start site region 113511	308 bp downstream
Tssr113512	transcription start site region 113512	295 bp downstream