rs51807987 SNP Detail

Summary

• ID
  rs51807987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179784898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGTACCAA GTTAAGCATA GGGCTGGTTG TTATAAATAT
  TAATTGGTAC ACGGCTTCTT CTATTCTTAG CCCTGAGTTG GAGAGTGGAT TGGAAAGCTT
  R
  CACACTGTGG GCTGTTTAAC CACACATGTC CTTTCTCAAC CTACCATTAT ACCTTCTCGT
  CTTCCTTCTT TATTTTTATT TTTCCTGAAA GATAGGGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146372675	ENSMUSSNP5648905	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51807987					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179784898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1100	CpG island 1100	1793 bp proximal
Rr20822	regulatory region 20822	within coordinates
Rr29078	regulatory region 29078	1502 bp proximal