rs51808540 SNP Detail

Summary

• ID
  rs51808540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:79886296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCTGAGAG AGCCTGGGGC TGGTTTGGCT CCCAACACTC
  GAACAGTGAG AAATCTCTCA ACACAGATCG CTGAAGGGAA ATTCCCAAGA GCACCTGACC
  R
  GTTCTGGCCA AGGCACAAAG GGTGCAGCCA ATAACAACAA GCCACTTAAC CCAGTGGTTC
  TCAACCTTCC TAACGTTGTG ACCCTAAATA CAGTTCGTCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss61291527	NES16900888	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs51808540					SNP	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291527	NES16900888	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79886296 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpx4	glutathione peroxidase 4			Intron
				Noncoding-Transcript-Variant
Rr384983	regulatory region 384983			within coordinates
Rr435054	regulatory region 435054			1552 bp distal
Rr435055	regulatory region 435055			within coordinates
Rr435056	regulatory region 435056			1954 bp proximal