rs51809856 SNP Detail

Summary

• ID
  rs51809856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16193815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTAACT AGTTCCTTTT
  TTGACCCAGT TCCCCAAACC TTGGTCATTG AGACTTTATT TCCTGAGCCA TATTGAGGAA
  AGACAGGTGA GAAAGAAAAC CTCTCCAGCG TTGGTTGGTG TGTGAGGGGT GGGTTCCCTG
  CTTTAGGAGA TTGGCCCTGG TCCTGACACA ATGTGACTCA TATAAGACTC TATGTACAAG
  Y
  TTCCCCTGTG TTGGCCACAA CTGCAGTTTC TACTAACTTG GAATCAATTG TATCATGTGA
  CTAGGTATAT GTGTGACTTC CACCATGTTT AATGGCACAG TGGATGTTAG CACTCTGTCC
  TTCCCTCTGA CTTACAAGGC TTGTACAGAA AACCTATCAC TTGGCAGTTA GAGGTAGGGC
  AAAGAATTAG GTCATTTTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52620139	NES15517404	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51809856					SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620139	NES15517404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16193815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	1433 bp distal
Inhba	inhibin beta-A	within coordinates
Tssr118440	transcription start site region 118440	1932 bp downstream
Tssr118441	transcription start site region 118441	1817 bp downstream
Tssr118442	transcription start site region 118442	1597 bp downstream
Tssr118443	transcription start site region 118443	1113 bp downstream
Tssr118444	transcription start site region 118444	1052 bp downstream
Tssr118445	transcription start site region 118445	689 bp upstream