rs51810121 SNP Detail

Summary

• ID
  rs51810121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135717709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAAATGTC AGCATAGTCT
  AAATGGTCAA CCATACAGAC CAGGTCCTAA CAGTCTACAC TGTGAGAAAC ACTACTTTAT
  ATTCTTCCAC AGGATGACCT TGAGGAGGAA GAAATTGTCT CAAAAAGGCC AACACCAGCT
  CCATGGTTAG CATTTATGCT AGGAGAATTA ATTATGCTCT CCAGCTTTAT CTCCGTCCTA
  Y
  TGTGATCTCT CTGGCTACCC TTCGGCCTGC AAAACTGCGC CCCCTGGTGG ACAGCATTTG
  TGATTAGGGC TTTGGGTTAC CAGTTCTGTA GCTGAGTCTC AGACAAAGAT AGAGGAGGTG
  GTAAAGACGC AGTTTGGGAG AGAGGGTCTG TGTTGAGAAG GAGATGAAGG AGGGTCCTCC
  TCTCTCTTCT ACAGCAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60803586	NES16473380	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51810121					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803586	NES16473380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135717709 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	1678 bp distal
Rr419277	regulatory region 419277	1971 bp distal
Rr419278	regulatory region 419278	821 bp distal
Rr419279	regulatory region 419279	1003 bp distal
Rr419280	regulatory region 419280	within coordinates
Rr419281	regulatory region 419281	34 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron