rs51811555 SNP Detail

Summary

• ID
  rs51811555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13430445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACTGGG TGGAGTGTTG
  TGGATTTTCA GCCTCAAGCT TTGAACTTGT CCATAGAGGA AATGCATGCA CATTTGCATG
  TATTTGCCCT GGGAAGCAGT TCTTCTCAAT CAACCCCCAT AGACTGCTTT CCTAGAGCTT
  CACTTTCTCT CAATGGCCGT TGCATCTGCT CAGCCACTCA CCAGCATCCT GGCCTACAAG
  Y
  TGTGCCTTAG CAATTATGTT GTATGTCTCT TTAAGGTAGC CCTATCATTT CTAGTGAGAT
  AAATTTGCTG GAAGGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAACGAACCC AGAGGAACTA GGTACCAAGA AGCCCAGTCC TCCGTTGACC TGGAAGTAGA
  GAAAGGCTGC CAAGACAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
ss52145447	NES15237012	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
rs51811555					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52145447	NES15237012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13430445 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	1216 bp distal
Pex3	peroxisomal biogenesis factor 3	1559 bp upstream
Rr368928	regulatory region 368928	1390 bp downstream
Rr427802	regulatory region 427802	1874 bp distal
Rr427803	regulatory region 427803	1797 bp distal
Rr427804	regulatory region 427804	1592 bp distal
Rr427805	regulatory region 427805	1069 bp distal
Rr427806	regulatory region 427806	85 bp distal
Tssr92399	transcription start site region 92399	1462 bp downstream
Tssr92400	transcription start site region 92400	1443 bp downstream
Tssr96771	transcription start site region 96771	1831 bp upstream
Tssr96772	transcription start site region 96772	1640 bp upstream
Tssr96773	transcription start site region 96773	1616 bp upstream
Tssr96774	transcription start site region 96774	1575 bp upstream
Tssr96775	transcription start site region 96775	1548 bp upstream
Tssr96776	transcription start site region 96776	1535 bp upstream