rs51813873 SNP Detail

Summary

• ID
  rs51813873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87323158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCTTTGTT TGGTTTTAAA GCTGTGTAGT
  AGGCTTGACT AGGAATATGA TTGCTTGATG CCTTGTACGT CTCTTTAAGG TGAAAGAAGG
  AAAGAATTTT CTTAAGGCTT GCTTTAGTGA TCTGTAGGGG TCTTGTATGT GTGATGAAGT
  R
  GAATAAAACA ATATTCAGAG TACATGATCT GTAACTCAGT ACTGAAATTG TATTTACCTG
  GAAGATGTCA GCAGTCCAGC TTGTAGCAGC TTCCACTTGA GCTGAAAAGT ATGGCCTTGT
  GTGATACCTA GTGAACAGTA TTTTCTTCTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60763786	NES16401425	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		G
ss319829364	CHEV_1_89292011	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51813873					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60763786	NES16401425	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87323158 () rs orientation: forward

Symbol	Name	Function Class
Gigyf2	GRB10 interacting GYF protein 2	within coordinates
Kcnj13	potassium inwardly-rectifying channel, subfamily J, member 13	707 bp upstream
Rr414787	regulatory region 414787	718 bp distal
Rr414788	regulatory region 414788	549 bp distal
Rr414789	regulatory region 414789	1816 bp proximal
Tssr12853	transcription start site region 12853	702 bp upstream