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rs51816009 SNP Detail
Summary
  • ID
    rs51816009
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr10:77387760 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                        T TTGAAGGTCC TGAGTTCAAA TCCCAGCAAC CACATGGTGG
    CTCACAACCA TCTGTAATGA GATCTGATAC CCTTTTCTGG TGTTGTCTGA AGAGAGCTAC
    R
    GTGTACTTAG ATATAATAAT AAATATATCT TTAGACAGGA GTGAGCAGAG GTCCTGAATT
    CAGATTCCCA GTAACCACAT GATGGCTCAC AACCATCAGT A                    
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
ss149227893 ENSMUSSNP528244 ENSEMBL ENSEMBL_Sanger f SNP G A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
rs51816009 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:77387760 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Itgb2 integrin beta 2 Intron
Noncoding-Transcript-Variant
Tssr94243 transcription start site region 94243 1419 bp downstream
Tssr94244 transcription start site region 94244 1010 bp downstream
Tssr94245 transcription start site region 94245 1929 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory