rs51816659 SNP Detail

Summary

• ID
  rs51816659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4294024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGTTAT GAGGTAGCAA
  CAAAATAATT TTATGGTTGG GGGTCATCAC AGCATGAGGA AGTGTATTAA AGGGTTTCAG
  CATTACAAAG GTTGAGAACC ACTGGTTTAA GAGCTATGGA GTCCCCACCG TGGGAAACAG
  GCAGCTCAGA AAGTTATCTC TGGTGCTGTC CATGTCTGTC ACACATCAGC TCATCAGAAA
  Y
  AGAAGCTATT TTTATAACCT AGTTTTTTTT TTTTTTTTAA CTTTGTTCTA AATCGTAGGA
  CCTCTGGTCA TGGGGGTGGG AGGAATGTCT GATGAAAAAG TAGTTGGTCC TTTCAATGTT
  TTACTCTTGG TTTCTGCTTT CTATGGATAC TTGTTTTTTC TGGTTGTAGA ATTCTGAACA
  AAGGATAAAT GATTATGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61338490	NES16941108	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	C	C		C
ss323873817	CHEV_12_4244024	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51816659					SNP	T	T	T	T	T	T	C	T	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61338490	NES16941108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4294024 () rs orientation: forward

Symbol	Name	Function Class
4921501I09Rik	RIKEN cDNA 4921501I09 gene	within coordinates
Rr260536	regulatory region 260536	177 bp proximal
Rr263521	regulatory region 263521	1758 bp proximal