rs51816743 SNP Detail

Summary

• ID
  rs51816743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:64511154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACACAGG TACACACAAT
  GTTTAAGAAA CAGTAGAGAC GAGCCGACTA ACCAAAGAAA AATAACATTC CCATTTCTAT
  GAATCAGGGT CATCTAAGTG GCTCCAGAGC CCTGGCTACG TTCGTCAGGC AGTTTTCAAA
  ACTCTAGTTT ACTTGTAAAA TAAAATTGAC TGCTTTCATT AGTAGGTTAG CGGCTGAAGC
  R
  CATGAGGTGA AGCTTATCTG CAGCTGATTA TAACTGATTC CAGGCTGTTG AGAAGTAGAA
  ACTAGTAAAT GGCAGTGACC CCTCTGGGGG CCACTCAGCT GCCTAGGTGT TTCCCTGGCA
  TAGGGGTGAC CACCAAGTGT TTGCCAGAGT CTCTTCGGTG ATTTTTGCTC AGTAGGTGGG
  GTAGTCATCG ACCCAGATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62424153	NES17252502	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51816743					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62424153	NES17252502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:64511154 () rs orientation: forward

Symbol	Name	Function Class
Gm41176	predicted gene, 41176	within coordinates
Msra	methionine sulfoxide reductase A	Intron
Rr369847	regulatory region 369847	1248 bp downstream
Rr493865	regulatory region 493865	1200 bp distal
Rr493866	regulatory region 493866	834 bp distal