rs51816901 SNP Detail

Summary

• ID
  rs51816901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149149492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAAATGC CGGAGGCAGA
  GAGCTAGCCC TCTGTACAGT AGCAACACTT GTGCCGATGG GCTTCTTTAT GCTAGCAATG
  ACAGAGTTCC ATGCCCTGCA CTACTGGACT CAAAATTCAG AGTGCAATCT TTTCAGCACA
  GCATTCAGTA CCAAAAGGAA AAAGGAAACA CACAGTTCTG ACACTGAGAT ATTTTATGTG
  R
  ATAATAAATC CACCCCCCCA AACTCTACTA ACTACAAGTA TCTACCTAGA AGATAGAGTC
  TGAAATTTAT GACATCAGAA TGATTGGGTA TACCAGAAAA CATTTTTTCC CCTTCTTTTC
  AGGACTGTCA ACTTTGTTTA CTGTTTATGT TCAATTCTAT CTCCTACAAG GGATTAAATA
  TCCTTGTCAG AGCCATATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321018995	CHEV_3_149106819	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51816901					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149149492 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	1668 bp upstream
Rr587324	regulatory region 587324	928 bp proximal
Rr587325	regulatory region 587325	1327 bp proximal
Tssr36100	transcription start site region 36100	1331 bp downstream
Tssr36101	transcription start site region 36101	1398 bp downstream
Tssr36102	transcription start site region 36102	1412 bp downstream
Tssr36103	transcription start site region 36103	1496 bp downstream
Tssr36104	transcription start site region 36104	1521 bp downstream
Tssr36105	transcription start site region 36105	1598 bp downstream