rs51817293 SNP Detail

Summary

• ID
  rs51817293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164266578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG AAAGTTGGCC TCAGAATTTA
  R
  CACATGCCGT GGGCTAGCTC ACCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60337245	NES15839913	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	G	A		G	G	A	G		G
ss145978589	ENSMUSSNP5099522	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
ss320086026	CHEV_1_166369140	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51817293					SNP	A	A	A	A	A	A	A	G	G	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337245	NES15839913	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164266578 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Nme7	NME/NM23 family member 7	1708 bp downstream
Tssr9784	transcription start site region 9784	502 bp downstream
Tssr14731	transcription start site region 14731	1584 bp upstream
Tssr14732	transcription start site region 14732	1249 bp upstream
Tssr14733	transcription start site region 14733	1150 bp upstream
Tssr14734	transcription start site region 14734	1105 bp upstream
Tssr14735	transcription start site region 14735	1051 bp upstream
Tssr14736	transcription start site region 14736	1010 bp upstream
Tssr14737	transcription start site region 14737	950 bp upstream
Tssr14738	transcription start site region 14738	814 bp upstream
Tssr14739	transcription start site region 14739	630 bp upstream
Tssr14740	transcription start site region 14740	589 bp upstream
Tssr14741	transcription start site region 14741	512 bp upstream
Tssr14742	transcription start site region 14742	470 bp upstream