rs51818505 SNP Detail

Summary

• ID
  rs51818505
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48769294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACCCACA TAGAGACCCC
  TTAGATGACA GGAGCCTGGT GGTAGGCACC TTGGGATCTA TGCCTTTCTG GTGCCTATGT
  GTAGATCTCT GCCACCATCT CCCTCCGCAG TCTCTACACC TGCGTTCTGG AGGCCCCCCT
  GGGCCAGACA GCCCGCAAGT GGCTGCAGCT GGCCATGTTC TGCTCCCCAC TGGTGCCAGG
  R
  CAGACACACC TGCAGCTGCG CGTCTACTTC CTGAACAACA CTCCCTGCGC CCTGCAGTGG
  GCTATCACCA ATGAACAGCC GCACGGGGGA CGCATGCGCG GGCCGTGCCA GCTCTTCGAC
  TTCACTGGGG CCAGAGCAGA CCAGTGCCTG AAGCTCAAGT ACATCTCTGA GGGTAAGAGG
  GGTGGGCCCC AGGAGGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62766542	NES17348257	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51818505					SNP	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62766542	NES17348257	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48769294 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr370279	regulatory region 370279			within coordinates
Rr528302	regulatory region 528302			1745 bp distal
Rr528303	regulatory region 528303			570 bp distal
Tssr145120	transcription start site region 145120			89 bp upstream
Unc5cl	unc-5 family C-terminal like			Coding-Synonymous
				Noncoding-Transcript-Variant