rs51819100 SNP Detail

Summary

• ID
  rs51819100
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101048681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTCTG GTGGAACTGC
  CAGATTTATA GACCTTATTG CAGACCCTAA AATCTGAAAG ATATGGTGGA AAAGGTTTAA
  AACAACAACA ATCCCACCAG AACAGAACTT TCTCAAAGTG TGCAACAGCT ATGAACTTTA
  CGAGCGCCAA GCAAGGTTTT ATGCCTGCTT TACAGATTGG TGAACTAAGG GGTGTGTGTG
  K
  GTGGGGGGGG GGGGAGCAGA TCGTTTCCGT TAAATGCCTT TCTCAAGGTC ACGACGGTGC
  AAAAACCACC GGGGAAAGAG GATCTCAGGT CTCCGACCTT TCTGCACTGG AAAGGCAGCA
  CGGCGCAACG TGCTCCGCTC TGCTCGAAAT CCCAACGCCA CAAGGTTTTC GGGTTAAGGA
  TGGACACCCC GAATGCTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137998140	ENSMUSSNP6697596	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51819100					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101048681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	13 bp proximal
D130020L05Rik	RIKEN cDNA D130020L05 gene	29 bp upstream
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	within coordinates
Tssr114723	transcription start site region 114723	517 bp upstream
Tssr114724	transcription start site region 114724	1290 bp upstream
Tssr114725	transcription start site region 114725	1334 bp upstream
Tssr114726	transcription start site region 114726	1384 bp upstream
Tssr117352	transcription start site region 117352	1027 bp downstream
Tssr117353	transcription start site region 117353	1153 bp downstream
Tssr117354	transcription start site region 117354	1231 bp downstream