rs51819183 SNP Detail

Summary

• ID
  rs51819183
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127690976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGACAG GACAGTGTGG
  GAGATCATAG GTGTTGAAAG TTTGTGTGAG GATGTAGGTA TACAGAAGAG GGCAACTGAG
  AATAAGAAGC TCATATGAGA GGGAGCTGTG TGCATGAAGG TGTGGGCACA TGTAAGAGGT
  TCTGGGAGTG TGAAAGACCA CCCAAACACA CAGTATCCCT CCATACCAGC TGCAGCGGGC
  R
  CTCAGCTGTG CCTGGGTGTG CTGTTGGCTG CTTGTGCCTA GGAAGGAATG CAGGCTCTCT
  GTCGCTTGTT CCTCCCCTTT TGCCTCCTCT CCCTAAGCAT CTCTGAGTGA CCATGCCTAT
  TTCTCTCTGC TTCCTAGTGT GTGTGGCTTG TGGGAGCCCT GGGCTCATTT CCTGGTCTCT
  CTGCCGTAGT GTGCATTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874493	ENSMUSSNP5205801	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320958000	CHEV_3_127600245	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51819183					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127690976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	804 bp distal
Fam241a	family with sequence similarity 241, member A	1004 bp upstream
Rr398009	regulatory region 398009	754 bp downstream
Rr584896	regulatory region 584896	1308 bp distal
Rr584897	regulatory region 584897	513 bp distal
Tssr35607	transcription start site region 35607	1814 bp upstream
Tssr35608	transcription start site region 35608	1094 bp upstream
Tssr35609	transcription start site region 35609	1057 bp upstream
Tssr35610	transcription start site region 35610	990 bp upstream