rs51820064 SNP Detail

Summary

• ID
  rs51820064
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155089482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATCTCATC CCCGACCCTG AGCAGCCCCG AGTACAGCTT
  CGCGGTGTCC AGGTCAGCCA TGGCCTGCAC ATAGAGCCCT GCAAAGGAAG GAAGAGGGGA
  W
  GAGATGTCAT GCAGGACACA GTGACACACC CCTCACAACT GACGTCAGGT GTCGCTCCCT
  ACCTTCTGCC CCGTGCTTAA CCTCATTTCT CTGTGGCCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145777517	ENSMUSSNP4048317	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51820064					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155089482 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420974	regulatory region 420974			within coordinates
Rr420975	regulatory region 420975			1284 bp proximal
Rr420976	regulatory region 420976			1815 bp proximal