rs51820408 SNP Detail

Summary

• ID
  rs51820408
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164147972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCCCCAG TATGCATATG
  ACCTTGACAG TTGTAAAGCT CAGACATACT GGTATTTTCT CGGCTATTAT ATGGTTGAGC
  TAGAGTCAAT TCTGTAATTG AATATTGAAT ATAAATAGTA TATAATTACT TTAGAATTAT
  TGTGCTACAT ATATTTAGAT CCAGCATTTT CGTTTTGTCT CAAATCCATT TCTTCTCTTA
  K
  AATTGAGCTT AGTTGATAGG TGTCATGCAT TCCCTGCGGG TAGTCTTTGC CCCGTTTTAC
  CTAACACCGC GTCAACTGTT CTGTAAGGCG CTAGCCAAGG ACCACGGGTA AGGGGCCTGA
  GGCGGGGGAG GGGGAGCTTT AGAGTCTTTC CAGAAAAACA TAACAAAATA TTTTTTGAGT
  CTTTTAAAAT ATTGAATATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss60337899	NES15841638	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs51820408					SNP	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337899	NES15841638	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164147972 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nme7	NME/NM23 family member 7			Intron
				Noncoding-Transcript-Variant
Rr422185	regulatory region 422185			234 bp distal
Rr422186	regulatory region 422186			339 bp proximal
Rr422187	regulatory region 422187			891 bp proximal