rs51820477 SNP Detail

Summary

• ID
  rs51820477
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:128062738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGACCCT AGGAAGTGAC TGTGTTTGGG GGGGAAGGGA
  GGGCTTCCTT CTCTGGGAAG GGGGACAGAT GAGGAATGCA CTTCACAGCC GCGCCACCGC
  S
  ACGCCCGGCT CTCCGCTTCT AGTCCCGGGC TCCTGCTCTC CCTTCCTCCC TCCGCTTCCC
  GCAGTGCCCG GGCCACTCGG TGCCTGGCAC CCCGGGTCTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61060899	NES16065828	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51820477					SNP	G	G	G	G	G	G	C	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060899	NES16065828	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128062738 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19791	CpG island 19791			within coordinates
Gm32816	predicted gene, 32816			794 bp upstream
Rr368466	regulatory region 368466			583 bp upstream
Rr656040	regulatory region 656040			811 bp distal
Rr656041	regulatory region 656041			28 bp distal
Rr656042	regulatory region 656042			185 bp proximal
Rr656043	regulatory region 656043			1076 bp proximal
Rr656044	regulatory region 656044			1312 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1			Intron
				Noncoding-Transcript-Variant
Tssr2414	transcription start site region 2414			178 bp downstream
Tssr69425	transcription start site region 69425			923 bp upstream
Tssr75109	transcription start site region 75109			1288 bp upstream
Tssr75110	transcription start site region 75110			154 bp downstream
Tssr75111	transcription start site region 75111			299 bp downstream
Tssr75112	transcription start site region 75112			313 bp downstream
Tssr75113	transcription start site region 75113			375 bp downstream
Tssr75114	transcription start site region 75114			535 bp downstream
Tssr75115	transcription start site region 75115			565 bp downstream
Tssr75116	transcription start site region 75116			616 bp downstream