rs51822173 SNP Detail

Summary

• ID
  rs51822173
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106105897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGTGAGGA TTGGGAGGGG CCATTGGGGG ATTGCCATCC
  CAGAGGTGAG CAAAGTAGTA GATATGGGAA GTGGCATCAA ACTTAATTAC ATCACTAAAG
  C
  GAGTTATGTT TGAGCAGTCT TCCAACTCTG CAGCCAATGC TGTCATTTCA TCCAGTTTCT
  GTTCAAGTCT CCTTCCTTCT TCCATAGTTT GGTCTTTTG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145614861	ENSMUSSNP7198206	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322371921	CHEV_7_113650204	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51822173					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106105897 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74129	transcription start site region 74129	1735 bp upstream
Tssr74130	transcription start site region 74130	1686 bp upstream
Tssr74131	transcription start site region 74131	1475 bp upstream
Tssr74132	transcription start site region 74132	1299 bp upstream
Tssr74133	transcription start site region 74133	642 bp upstream
Tssr74134	transcription start site region 74134	387 bp upstream
Tssr74135	transcription start site region 74135	307 bp upstream
Tssr74136	transcription start site region 74136	261 bp upstream
Tssr74137	transcription start site region 74137	195 bp upstream
Tssr74138	transcription start site region 74138	157 bp upstream
Tssr74139	transcription start site region 74139	115 bp upstream
Tssr74140	transcription start site region 74140	62 bp upstream
Tssr74141	transcription start site region 74141	313 bp downstream
Tssr74142	transcription start site region 74142	456 bp downstream