rs51823592 SNP Detail

Summary

• ID
  rs51823592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134583868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC TAAACTGAAG GCAGGAGGAT
  Y
  GAGAAACCGT GGTCAGCCTG GGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133782539	ENSMUSSNP260881	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321980839	CHEV_6_134556923	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51823592					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134583868 () rs orientation: forward

Symbol	Name	Function Class
Gm38910	predicted gene, 38910	within coordinates
Rr133398	regulatory region 133398	333 bp proximal
Rr147833	regulatory region 147833	within coordinates
Tssr59244	transcription start site region 59244	1134 bp downstream