rs51823759 SNP Detail

Summary

• ID
  rs51823759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105286632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGATGTT GGTCAGGGAC
  TTGAAATAAA GAAGGTGATT CATAACACCC CAACATTTTA CCAGCAGAGC TTAGCCCAGA
  AATATTATTA TGCATGAGTG CCTCTCAAGA TTGCTTTTAG GAAAGCAATT TCAGGATTCA
  GTAATTATTC TAAAATGTTT CAAACTGCCC CCCCCCAGTT GCTTTCTAGA CAATTCTTTG
  R
  AGTGAGAAAT GCAAGAATTC AGCATGTAGA AGGTTAACAC CTCCAACTCT ATTCATTTCC
  ACTGGCTGGG ATTTTAATTC ACAGAGCATC ATGGGTGTTC TGCCTTCTGT CCAGTCTTGT
  AAAGCTGTCA CACAGAGAAG GTTAATTAAC TGGGGCAGGC TGCAATGGGG CAGTTCCTAA
  GACACACTGG AGGTCAGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145082645	ENSMUSSNP468257	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51823759					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105286632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	1886 bp distal
D1Mit307	DNA segment, Chr 1, Massachusetts Institute of Technology 307	944 bp proximal
Gm17634	predicted gene, 17634	within coordinates
Rr416392	regulatory region 416392	1575 bp distal
Rr416393	regulatory region 416393	117 bp proximal
Tssr8258	transcription start site region 8258	1818 bp downstream
Tssr13130	transcription start site region 13130	1944 bp upstream