rs51824995 SNP Detail

Summary

• ID
  rs51824995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127290081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGCTGGG CAACATAGCA
  TAGTTTCACT CAAATTACTA ATGAAACATA CTAATTTACC AATTCTATTT GCTATATACA
  CATCAGAACT TTTGAAAAAT ATTTTTATTT CTGAATTTTC GACACATATT AAAATTATGA
  TTAATGAGTG TATTACTAAA CGACATTAAT TTGCTTAACT ATAATTCTGA CTCCTTTGGA
  Y
  TTCTGTGCTT TTTAATTATG CTTTTCTCCC CATATAGCTC AGAAAGAGAA GAAGGTTCAT
  ATTTTAAGCC AGTTAAGCCC AGAATTCACC TGATAAAGAA TGAAGGACAC AAAGAAACGT
  GTCCCGGAAA CTGTGACACA GTTACAACAC AGTGTGACTG GAACATACAA CAGCTCATCA
  TGTAGCTGGA TGATCCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61079263	NES16587019	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T	C	C	T	T	T		T	T	T	T		T
ss135865032	ENSMUSSNP742919	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss320954666	CHEV_3_127199350	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51824995					SNP	C	C	?	T	C	T	C	C	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079263	NES16587019	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127290081 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	1900 bp proximal