rs51825315 SNP Detail

Summary

• ID
  rs51825315
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110243613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCACCTAAG TCTGAAAGAG AGTGGGGGGG GGGTTGATCT
  GTAAGCTCAG AGGAGCCCTG CTTAGGGATA GAACCATGAG TGGAACCCCC AGCCAGGCAC
  D
  TTCAGGGAGA TTTCTGAAGT CCTCCTGAAA GACCTTACAA AGAGTGCTAG AAACAGCAAA
  GGAGTCTGAT GGCTTCCTTC AGGTGGGAAG TGCTGATGT                       
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss138688729	ENSMUSSNP3901020	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324157571	CHEV_12_111515389	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51825315					SNP	A	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110243613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5110	CpG island 5110	99 bp proximal
Dio3os	deiodinase, iodothyronine type III, opposite strand	within coordinates
Mir1247	microRNA 1247	869 bp downstream
Rr472865	regulatory region 472865	940 bp distal
Rr472866	regulatory region 472866	within coordinates
Rr472867	regulatory region 472867	900 bp proximal
Rr472868	regulatory region 472868	1005 bp proximal
Tssr117772	transcription start site region 117772	1753 bp downstream
Tssr117773	transcription start site region 117773	1779 bp downstream