rs51825966 SNP Detail

Summary

• ID
  rs51825966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74597424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTTTTT TTTTTTTTTT TTTTGAGACA GGGTTTCTGT
  TTAATCCTAG AACTCACTTT GTAGACCAAG CAGGCCTCAA ATTCAAGGAT CCCCTTGCCT
  Y
  TGCGCCCCTT CCCCCATGTT TTGATTCTAG GCTTGCGGCA CCACACCCAA CAAACCTTTT
  TTCTTTCAAA ACACTGGCAT GTATCAGAAC AATACAGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132435321	ENSMUSSNP6373819	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss323749421	CHEV_11_74520100	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51825966					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74597424 () rs orientation: forward

Symbol	Name	Function Class
D11Mit352	DNA Segment, Chr 11 Massachusetts Institute of Technology 352	637 bp proximal
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	within coordinates
Rr386282	regulatory region 386282	within coordinates
Tssr109134	transcription start site region 109134	968 bp upstream