rs51826180 SNP Detail

Summary

• ID
  rs51826180
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52651416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCAATGT ACTTTATTTA
  ACACTACAGA GAGATAACAA AAATCGAGGT TGCAAAATAT GGAACGCTTC ACGAATTTGC
  GTGTCATCCT TGCGCAGGGG CCATGCTAAT CTTCTCTGTA TCGTTCCAAT TTTAGTATAT
  GTGCTGCCGA AGCGAGCACG ATCTTAAGGC CTAACCGTGG ACTATATAAG GACTCAGAAA
  W
  TCAGATTCTT TAACTTAGGG TGATTTTAGT GCTTACGATC CTCGAACTCC TCCGTGCACC
  CTAAAACGAA GGAGAAATTT TTCAGCAGAA CTGTGTGGCT AGACTCTTGA AATCCCCCTG
  CTGCTGAGGG AATTGCGCAG GCAGCGTGGG TCCGTGTGGT TTACCACGGG GGGGGGTATG
  CAAATTAGAG CCCGGTGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52423975	NES15399387	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A	T	A	A	A	T	A	A	T	A
ss137738366	ENSMUSSNP4694111	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51826180					SNP	T	T	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423975	NES15399387	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52651416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4596	CpG island 4596	840 bp distal
Cpgi4597	CpG island 4597	8 bp proximal
Gm23296	predicted gene, 23296	42 bp upstream
Gm24859	predicted gene, 24859	739 bp downstream
Gm35239	predicted gene, 35239	204 bp upstream
Gm59577	predicted gene, 59577	within coordinates
Rr369517	regulatory region 369517	51 bp upstream
Rr403283	regulatory region 403283	679 bp downstream
Rr403284	regulatory region 403284	within coordinates
Rr466026	regulatory region 466026	1750 bp distal
Rr466027	regulatory region 466027	within coordinates
Rr466028	regulatory region 466028	250 bp proximal