rs51826909 SNP Detail

Summary

• ID
  rs51826909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156057951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT GTTGGGATCT GTTTTAAATC
  R
  CATAAGGATC CGTGTGATTT AAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60330229	NES15828189	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A		A	A	A	A	G
ss145791132	ENSMUSSNP6550512	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs51826909					SNP	G	G	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60330229	NES15828189	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156057951 () rs orientation: forward

Symbol	Name	Function Class
Rr421146	regulatory region 421146	1027 bp distal
Rr421147	regulatory region 421147	491 bp distal
Rr421148	regulatory region 421148	741 bp distal
Rr421149	regulatory region 421149	621 bp distal
Rr421150	regulatory region 421150	256 bp proximal