rs51827234 SNP Detail

Summary

• ID
  rs51827234
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:80564943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGCTTT TGCTCTTTCT
  TTAAAACTGG AATAATAACA GCACGTTTTT TGGGATTATT GTGAGAACAG TTTCAGTAGG
  TATGGAGGTG ACAAGTGAGT GCCAGACAGG AATGTCTCTG AATGCTTTGC TTGCAATAAT
  ATCTGCAAAC ATTCATCATT AAAGATTAAA AGCAGCGTTT AGATTTTAGG GGAGAAATAT
  W
  CCCTCTGGAC TGAAAAATAC TTTTTCTTTT TTGTTTCAGA TTTTGATGAT TATTATTTCA
  ATTAAAATGT ATAATTAAAG TATTTAATTA AACCACCACA CAGATATTGA TGTGTAGCCT
  GACACTGAGG CTTTGCACTG GCAGTTATGG CTGCCTTGGA ATTCATACAT AAAGTTTTAT
  TCTGAGAATT CCAAGTGTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61432482	NES16813841	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	A	T	T	T		A	A	A	A		T
ss323024894	CHEV_9_80576497	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51827234					SNP	T	T	A	T	T	T	A	T	T	T	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61432482	NES16813841	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:80564943 () rs orientation: forward

Symbol	Name	Function Class
Rr683772	regulatory region 683772	642 bp distal
Rr683773	regulatory region 683773	110 bp proximal
Tssr86335	transcription start site region 86335	977 bp downstream