rs51827849 SNP Detail

Summary

• ID
  rs51827849
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55252462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTT TCTGAACCTT GGGTTCCCGC
  W
  CCTCCATCCC AACCATCCAA ATTAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52722755	NES15566819	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	A	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51827849					SNP	T	T	T	T	T	T	T	A	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52722755	NES15566819	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55252462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	within coordinates
Gm63342	predicted gene, 63342	1791 bp downstream
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	449 bp upstream
Rr369830	regulatory region 369830	80 bp upstream
Rr369831	regulatory region 369831	299 bp upstream
Rr404108	regulatory region 404108	583 bp downstream
Rr492392	regulatory region 492392	within coordinates
Rr492393	regulatory region 492393	141 bp proximal
Rr492394	regulatory region 492394	460 bp proximal
Rr492395	regulatory region 492395	786 bp proximal
Rr492396	regulatory region 492396	1153 bp proximal
Tssr125743	transcription start site region 125743	525 bp upstream