rs51827891 SNP Detail

Summary

• ID
  rs51827891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCCCATC TGTAGGATGG
  TAATCTTTCA GGCTAGCCTT GGCTAGCATA GTGAGACCTG TGACAAGAGA AGAAGGAAAC
  AGGAGAAGGA GAAAGGAAAC AAGAGAGGGA CCTGCACCTA TCCTGTCCTC TCAGTCAACT
  CCACCTGCCT GCTCTGTCCG GGGATCCTCT TGGTAAGTCC TTGGCAGGAC ATTGCATCCA
  Y
  CCTTCTGATG CTTGCATTTG CTCATTCTTT CCCCATCTAA GACCTGTCCA CAGTAACTCG
  TTCTTCTCTG CACTGTCTCC TGACCTCCAG AAAGCTACCT TTCCTCTCAG ATCTACTCTT
  TTCTTCCTCA GATTTCTCAA GCCTCTCTAC TTCCTCATAG CTCAGGCTGC CCCTGGAGAG
  CTCCAAACAG AAGGTTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742430	ENSMUSSNP5765462	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51827891					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393927 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	221 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	474 bp upstream
Ighj2	immunoglobulin heavy joining 2	792 bp upstream
Ighj3	immunoglobulin heavy joining 3	1175 bp upstream
Ighj4	immunoglobulin heavy joining 4	1740 bp upstream
Tssr115504	transcription start site region 115504	67 bp downstream
Tssr118005	transcription start site region 118005	1760 bp upstream
Tssr118006	transcription start site region 118006	1729 bp upstream
Tssr118007	transcription start site region 118007	1683 bp upstream
Tssr118008	transcription start site region 118008	1656 bp upstream
Tssr118009	transcription start site region 118009	1645 bp upstream
Tssr118010	transcription start site region 118010	1507 bp upstream
Tssr118011	transcription start site region 118011	1409 bp upstream
Tssr118012	transcription start site region 118012	1174 bp upstream
Tssr118013	transcription start site region 118013	1159 bp upstream
Tssr118014	transcription start site region 118014	1055 bp upstream
Tssr118015	transcription start site region 118015	959 bp upstream
Tssr118016	transcription start site region 118016	805 bp upstream
Tssr118017	transcription start site region 118017	465 bp upstream
Tssr118018	transcription start site region 118018	69 bp downstream
Tssr118019	transcription start site region 118019	86 bp downstream
Tssr118020	transcription start site region 118020	142 bp downstream
Tssr118021	transcription start site region 118021	282 bp downstream
Tssr118022	transcription start site region 118022	314 bp downstream
Tssr118023	transcription start site region 118023	479 bp downstream