rs51829226 SNP Detail

Summary

• ID
  rs51829226
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10610771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAGAAC TAACTCCTGC
  AGATTGTCCT CTGACTTAAA CATGCCAACC ATTGCATACG CACCCGCACA TACATAAATG
  AAAACTGTTT TTTGTTTTTT TACAAGACAG GGTTTCTCTG TATAGCCCTG GCTGTCCTGG
  AACTCACTTG TAGACCAGGC TGGCCTCGAA CTCAGAAATC CGCCCGCCTC TGCCTCCCAA
  G
  TGCTGGGATT AAAGGCGTGC ACCACCACTG CCCGGCTAAA TGAAAATTGT AACAAATTTG
  TAAAACCCCT TTAAAATAAA CTCACTCAGG CCCCAAATGT TGATGATTTG CTACTGGTTC
  CAGCACTTTC TGTGGGATCT CTTCTAAGTT TCTTAACCTT TGATCTTTAA TAGGGGCCAA
  TGTAAAGAAA AGGGGCAGGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146607082	ENSMUSSNP2626775	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51829226					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10610771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	123 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	419 bp upstream
Rr533778	regulatory region 533778	673 bp distal
Rr533779	regulatory region 533779	995 bp distal
Rr533780	regulatory region 533780	within coordinates
Rr533781	regulatory region 533781	635 bp distal
Rr533782	regulatory region 533782	329 bp distal
Tssr152429	transcription start site region 152429	655 bp upstream
Tssr152430	transcription start site region 152430	627 bp upstream
Tssr152431	transcription start site region 152431	483 bp upstream
Tssr152432	transcription start site region 152432	459 bp upstream
Tssr152433	transcription start site region 152433	408 bp upstream