rs51829229 SNP Detail

Summary

• ID
  rs51829229
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67599553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAAGTGT ACGCCCAGAA
  TCACCATGCC CAGGCAAAGA CCTTCACCCA GCCAACACTG CCCAGGCAAT CCTTGAACTT
  ACAAGCTTCT CCATTCCTTG ATTTCTGTCA GTCTAACGCA GGGGTCAGTC CCACCAACCC
  CCGCAGCGCC CTCTCACCAG CCCTGTCCAG AAAGCTCCTC CAAATCAGCT CTTCCCAGCT
  T
  CCATTCCATC CGGTCCCTGT TCCTTCCGGA ACTATGCACC CCGCACAGAC CCTGGGATGA
  CTGAACCCTG GACCAACCTC CATGTCAGAG ATCCAACGGG AGAGCACAGC AGGACCAGAG
  TCTGGCCCAG CTTTGGATAA GAGCCGCACA TGCTTACTAA AAGATGAACT GTTTACTAAA
  AGTGCAGACC TGTGACGTCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149266920	ENSMUSSNP1929682	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51829229					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67599553 () rs orientation: forward

Symbol	Name	Function Class
Gm38307	predicted gene, 38307	224 bp upstream
Rr388629	regulatory region 388629	within coordinates
Tssr120253	transcription start site region 120253	175 bp downstream
Tssr123102	transcription start site region 123102	157 bp downstream
Zfp874a	zinc finger protein 874a	within coordinates