rs51830809 SNP Detail

Summary

• ID
  rs51830809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28908791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGCAGG TGACCCAAGC
  AGCCACGCTC TGGGACGCGA GCGGGCTGTC AGCTCCCAGG CGGCAGCCAG AGCTCCGGAC
  CGCTCCCGAC CCAGGCTCAC CTGGTTTCCG GTGGCCCGCA GGAGCGCAGA CGCTGGGGAC
  AGACTCGGCT CCAGCCTGGC TGGCGGCAGC GCTGCGGACG CGGAGGCCGG CAGTTCCGGA
  R
  CCGTTGCTGC AGAACCCGCG GGCGTTCCGG CTGTGCGGGT GACGGGCGAG GATGGCATCT
  GGGCCGAGGA GAAGGGGTCC CTGCTGCCCT CCACATACCC GGATCTTCTA GAAATAGCCA
  CGAGAATAAG ATTTCCCCTT TCTCCTGCTC GGTGTAGGCA TGGGTGGATG TGGGTTCTTA
  CGGGTCTAAC TTTCCCCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60560557	NES16578129	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51830809					SNP	G	G	G	G	G	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60560557	NES16578129	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28908791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8895	CpG island 8895	within coordinates
Cpgi8896	CpG island 8896	936 bp proximal
Mapk14	mitogen-activated protein kinase 14	1525 bp upstream
Rr370201	regulatory region 370201	1309 bp upstream
Rr524631	regulatory region 524631	33 bp distal
Rr524632	regulatory region 524632	within coordinates
Rr524633	regulatory region 524633	1022 bp proximal
Slc26a8	solute carrier family 26, member 8	within coordinates
Tssr143452	transcription start site region 143452	1511 bp upstream
Tssr143453	transcription start site region 143453	1571 bp upstream
Tssr143454	transcription start site region 143454	1602 bp upstream
Tssr143455	transcription start site region 143455	1645 bp upstream
Tssr143456	transcription start site region 143456	1973 bp upstream
Tssr147147	transcription start site region 147147	53 bp upstream
Tssr147148	transcription start site region 147148	39 bp upstream
Tssr147149	transcription start site region 147149	within coordinates
Tssr147150	transcription start site region 147150	1328 bp downstream
Tssr147151	transcription start site region 147151	1402 bp downstream