rs51831129 SNP Detail

Summary

• ID
  rs51831129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190955304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAAATTGACT CTAGTCCTCT GCAGGAGCAG GTCTTTCTTG
  TAACTGCGGA GCCATGTCTC CAGCCTCCAT AGTGTCCTCT CTGCTTTCAT GTCACACATA
  Y
  ACATGCATAT ACAGATTTAA ATCTAGATTC TGCATATGAC AGAAAGCATG CTATACTTTC
  CCCAAGTGTG GCTTAGGTCA CTTAACACAA TGATTTCCAG T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146503181	ENSMUSSNP5091052	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51831129					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190955304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	736 bp proximal
D730003I15Rik	RIKEN cDNA D730003I15 gene	1347 bp upstream
Rr26272	regulatory region 26272	628 bp distal
Rr29193	regulatory region 29193	696 bp proximal
Rr396715	regulatory region 396715	1045 bp upstream
Tssr372	transcription start site region 372	1740 bp downstream
Tssr10744	transcription start site region 10744	1336 bp upstream
Tssr10745	transcription start site region 10745	1355 bp upstream
Tssr10746	transcription start site region 10746	1939 bp upstream
Tssr15770	transcription start site region 15770	1804 bp downstream
Tssr15771	transcription start site region 15771	1869 bp downstream