rs51833808 SNP Detail

Summary

• ID
  rs51833808
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108533141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGGATTT AGTCCTTTTC
  TCTCCCCCAA AGAGAATGCA ACCCTTTGCT ATTTAGTTCA CTTATATACC CTAGCATATA
  AGAGAGAGTC TGGTGCATAT TAAGCATTTA AATTGTTGAA TGAATATGCC TCCCTAATGA
  TGCCTTATGA AGCCATCACA AATAAAGCAC TATTGGTCAG GCATGATGAT TCCTGCCTAT
  W
  GTCCTAGCAT TCGGGAAGCA GAGGCAGGAA AGTTGAGGTA AGTTCCAGGC CAACCTAACC
  TATATGGCTA GGCGTGGAAT GCAAAGTAGA TCCTGAGTCC AAATTTTAAT TCATTGATTA
  ATAAGTTAAA TGGATGTAAC AGTGAATCCC CTGTAAGACT GATATTTAAT ATCCATTTAA
  GTCTTAAACA ATTGCGACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145637767	ENSMUSSNP1381418	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322388629	CHEV_7_116077448	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51833808					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108533141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	332 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	1000 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	481 bp upstream
Rr400539	regulatory region 400539	223 bp upstream
Rr652951	regulatory region 652951	1231 bp distal
Rr652952	regulatory region 652952	within coordinates
Rr652953	regulatory region 652953	213 bp proximal
Tssr68456	transcription start site region 68456	471 bp upstream
Tssr68457	transcription start site region 68457	583 bp upstream