rs51835524 SNP Detail

Summary

• ID
  rs51835524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127202940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCAGCCCC TTCCACGCTT
  GTGAGTTGCA TCACTCTGAG CCCTGGGTTG CATTGGAGCA GGTGGTGTAC AGAGTCAGGA
  ACTGTTGTTT TCTTACAAGA TATTTTTGGG TGGTCTGGTT CCTTCTGTTT CTAGCAGACA
  GGGTAAAGCA GCCTACACTT GCATTTAGAT TTATTCACAA CCTGTATGTA ACAGAAGCAC
  R
  GCAGTGACTG GAGACCCACT CCTGAGTCAA GATGCCAATG CTATGGGAGT GACCTCATCT
  GCAAAAGCCA CCGACACTGC CCAAACCACC TTGCAACACA TCATCCATCT CGTGCATGCA
  TGCGTGTGCC TGTGCGTGAG TGTGTGCGTG TGTGTGTGTG CATACTTTAA GCAAGTCATC
  ACAGTATGGT TCATGGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135862653	ENSMUSSNP5833043	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320953862	CHEV_3_127112209	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs51835524					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127202940 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	376 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	1993 bp distal
Rr584773	regulatory region 584773	335 bp distal
Rr584774	regulatory region 584774	within coordinates
Tssr35571	transcription start site region 35571	404 bp upstream
Tssr35572	transcription start site region 35572	310 bp upstream
Tssr35573	transcription start site region 35573	283 bp upstream
Tssr35574	transcription start site region 35574	248 bp upstream
Tssr35575	transcription start site region 35575	227 bp upstream