rs51837233 SNP Detail

Summary

• ID
  rs51837233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA GAGCACACAA TGATGCCTGA
  R
  CTGTGACTGT CCTGAGGTCC TAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148223096	ENSMUSSNP479461	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320605476	CHEV_2_164159512	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51837233					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175696 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	442 bp downstream
Tssr745	transcription start site region 745	399 bp downstream
Tssr746	transcription start site region 746	392 bp downstream
Tssr747	transcription start site region 747	379 bp upstream
Tssr748	transcription start site region 748	354 bp downstream
Tssr749	transcription start site region 749	317 bp downstream
Tssr750	transcription start site region 750	300 bp downstream
Tssr751	transcription start site region 751	248 bp downstream
Tssr752	transcription start site region 752	186 bp downstream
Tssr753	transcription start site region 753	176 bp downstream
Tssr754	transcription start site region 754	488 bp upstream
Tssr21562	transcription start site region 21562	1040 bp downstream
Tssr21563	transcription start site region 21563	1031 bp downstream
Tssr21564	transcription start site region 21564	1000 bp downstream
Tssr21565	transcription start site region 21565	987 bp downstream
Tssr21566	transcription start site region 21566	976 bp downstream
Tssr21567	transcription start site region 21567	964 bp downstream
Tssr21568	transcription start site region 21568	955 bp downstream
Tssr21569	transcription start site region 21569	450 bp downstream
Tssr21570	transcription start site region 21570	408 bp downstream
Tssr21571	transcription start site region 21571	380 bp downstream
Tssr21572	transcription start site region 21572	366 bp downstream
Tssr21573	transcription start site region 21573	335 bp downstream
Tssr21574	transcription start site region 21574	273 bp downstream
Tssr21575	transcription start site region 21575	500 bp upstream
Tssr21576	transcription start site region 21576	516 bp upstream
Tssr21577	transcription start site region 21577	535 bp upstream
Tssr27433	transcription start site region 27433	420 bp upstream
Tssr27434	transcription start site region 27434	390 bp upstream
Tssr27435	transcription start site region 27435	365 bp upstream
Tssr27436	transcription start site region 27436	348 bp upstream
Tssr27437	transcription start site region 27437	307 bp upstream
Tssr27438	transcription start site region 27438	290 bp upstream
Tssr27439	transcription start site region 27439	285 bp upstream
Tssr27440	transcription start site region 27440	269 bp upstream
Tssr27441	transcription start site region 27441	220 bp upstream
Tssr27442	transcription start site region 27442	210 bp upstream
Tssr27443	transcription start site region 27443	151 bp upstream
Tssr27444	transcription start site region 27444	140 bp upstream
Tssr27445	transcription start site region 27445	473 bp downstream
Tssr27446	transcription start site region 27446	517 bp downstream
Tssr27447	transcription start site region 27447	612 bp downstream
Tssr27448	transcription start site region 27448	1226 bp downstream