rs51838233 SNP Detail

Summary

• ID
  rs51838233
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165467769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACTGCTAG CTCTGGTGAA TTCAAGAAGA AATGGACAGC
  ATAGACTTTT AGTTTGTAAA TACTAAGGGA TTACGTTGTT TTAGTAATAA CCGCTTCTTC
  S
  TTTAGGAAGT AGAGGTTTCT TTGGTGTCGG GGCACATTTT TTTTTCTCCC AGTTAGATTT
  TCATGAATAA ACTATCCTGG CATCCAGAAC TCATTAATA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146003982	ENSMUSSNP1324349	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51838233					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165467769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	1622 bp proximal
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	1434 bp upstream
Rr396497	regulatory region 396497	1178 bp upstream
Rr396498	regulatory region 396498	1883 bp upstream