rs51838954 SNP Detail

Summary

• ID
  rs51838954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91115617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGAACCT CAAAGAAATA
  TCTCAAAGAA GCCCCACGAA GCATGTGATT ATACAGTCCC TATCAGTACT TAATGATAAA
  CATGTAAAAT CCTCACTAGG GGTGGGGGAT GACAAGGAAT TTCAAAATCT TCATTGGGAA
  GCAGACAAGT CATGTGTAAA CAAGAATAAG AACACGTTTC CAATCCAATA GACTACTCAG
  Y
  GACATGTTCT GATATTTAGT AACACGAAAA TGTAACCTAT AGAACATCTA TCTTTTGAAG
  ACAAGAACTT GTAAGTCAAC CAAGATAGTC CCTGAAACAT GTGGTCACAT GCTGTTGCTT
  AGACTTTAAG TTTTTGAAAG CAGTCATCAA AGCAGAGTAC TTTAGATTGA TAATTTGAAT
  CTCACAAGAC CATGGGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52460367	NES15428534	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51838954					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52460367	NES15428534	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91115617 () rs orientation: forward

Symbol	Name	Function Class
Cep128	centrosomal protein 128	within coordinates
Rr268939	regulatory region 268939	817 bp distal