rs51839621 SNP Detail

Summary

• ID
  rs51839621
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78523218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTAGATC CCTCTGCTTT
  TAGGCGCGCC CATTTCAGAT TGCTAAACCC TGGTGTGAAG CGGGACAGGC CAGGGCAGGA
  GGTGGCCAAC CACACCCCGC AGGGCGCGCA CTTGGCGGGC TGCAGACCCC ACGGGCAGAC
  GCCGAGATGC GCAGTCGGAG GCTCCTGAGC GCGGCCCACC TTCTCTGCTT GTGCGCGGTC
  K
  CGCTGGCCGC CCCAGGGTAG GAGCGCGGGC TGGAGGGCGC CCGCGCAGGG GATGCGCGCG
  GCATGTGGGA CCCGCCAGGG GGGCTTTCTT TAGGGTCCTT GTGCTGCGAC AACTTGTCAA
  AGAACGTCGT TCTAGCTGTA GTTCACGCTG CTCTGCCTTT TGCCTCGCAA CTTGTTGCTC
  CTCAATAATG TACCTCTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss61426857	NES16809512	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs51839621					SNP	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426857	NES16809512	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78523218 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	Coding-NonSynonymous
Cpgi22073	CpG island 22073	within coordinates
Gm69315	predicted gene, 69315	279 bp upstream
Rr683597	regulatory region 683597	1340 bp distal
Rr683598	regulatory region 683598	380 bp distal
Rr683599	regulatory region 683599	within coordinates
Tssr86295	transcription start site region 86295	462 bp downstream
Tssr86296	transcription start site region 86296	443 bp downstream
Tssr86297	transcription start site region 86297	427 bp downstream
Tssr86298	transcription start site region 86298	193 bp downstream
Tssr86299	transcription start site region 86299	150 bp downstream
Tssr86300	transcription start site region 86300	127 bp downstream
Tssr86301	transcription start site region 86301	104 bp downstream
Tssr86302	transcription start site region 86302	55 bp downstream
Tssr90659	transcription start site region 90659	279 bp upstream