rs51840604 SNP Detail

Summary

• ID
  rs51840604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85696276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGTAGTGC TCTTCGTGAT
  CATCCCCTAG CTGGTTATGT TGGTGCTGCC ATTTGCAAAA GTTCTTGAGG GTCGTGGCCG
  CATTCTTGCT CACCTCCAGA CTCGTGTCCT TGTCCGTCAG CACCACCACC TTCACCACCG
  CCAGGCGGAT GTGGTTCTCA ATGCTTGCAT GACTGTACAG CCTGTTGGCG ATGGAGGCCA
  R
  GGTCAGCAGG TAATGCTGCA GGCCCCGCCC ATACATCCTG GCCATGGACG AGTCAGCCAC
  CAAGAGGAGC TCCACCTGGC GGGCCCTGGA GATGGAACGG CGCCTACGCC TCCACCAAGT
  CTGAGGTCCC GCGTTCCCAG ATGGCGAGAA AGCTGAGTGG TCCAGCAGCT GCGGGGCCAG
  CGCTGAGCGT CTCCTAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60245686	NES15750911	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51840604					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60245686	NES15750911	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85696276 () rs orientation: forward

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	within coordinates
Cpgi8391	CpG island 8391	within coordinates
Cpgi8392	CpG island 8392	1243 bp proximal
Gm46558	predicted gene, 46558	123 bp upstream
Rr319329	regulatory region 319329	within coordinates
Rr325517	regulatory region 325517	within coordinates
Tssr141913	transcription start site region 141913	32 bp upstream
Tssr141914	transcription start site region 141914	842 bp downstream
Tssr141915	transcription start site region 141915	877 bp downstream
Tssr141916	transcription start site region 141916	906 bp downstream
Tssr141917	transcription start site region 141917	1215 bp downstream
Tssr141918	transcription start site region 141918	1293 bp downstream
Tssr141919	transcription start site region 141919	1331 bp downstream
Tssr141920	transcription start site region 141920	1668 bp downstream
Tssr141921	transcription start site region 141921	1730 bp downstream
Tssr141922	transcription start site region 141922	1959 bp downstream