rs51842772 SNP Detail

Summary

• ID
  rs51842772
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98828210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTT GGTCCCTAAG ACAACAGAAG
  T
  CTCTAAAGCC ACCTTTGTCC CCAGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145056197	ENSMUSSNP3208797	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324500813	CHEV_13_99461657	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51842772					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98828210 () rs orientation: forward

Symbol	Name	Function Class
Rr281821	regulatory region 281821	1590 bp proximal
Tmem171	transmembrane protein 171	within coordinates
Tssr120815	transcription start site region 120815	602 bp upstream
Tssr123632	transcription start site region 123632	449 bp downstream
Tssr123633	transcription start site region 123633	493 bp downstream
Tssr123634	transcription start site region 123634	1013 bp downstream
Tssr123635	transcription start site region 123635	1023 bp downstream
Tssr123636	transcription start site region 123636	1057 bp downstream
Tssr123637	transcription start site region 123637	1087 bp downstream
Tssr123638	transcription start site region 123638	1417 bp downstream