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rs51842772 SNP Detail
Summary
  • ID
    rs51842772
  • Variation Type
    SNP
  • Alleles
    T
Genome Location and Flanking Sequence
  • Location
    Chr13:98828210 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGGTT GGTCCCTAAG ACAACAGAAG
    T
    CTCTAAAGCC ACCTTTGTCC CCAGT                                      
    
    T = T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
LG/J
SM/J
ss145056197 ENSMUSSNP3208797 ENSEMBL ENSEMBL_Sanger f SNP T T
ss324500813 CHEV_13_99461657 CHEVERUD SCREENING_POP f SNP T T
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
LG/J
SM/J
rs51842772 SNP T T T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:98828210 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr281821 regulatory region 281821 1590 bp proximal
Tmem171 transmembrane protein 171 within coordinates
Tssr120815 transcription start site region 120815 602 bp upstream
Tssr123632 transcription start site region 123632 449 bp downstream
Tssr123633 transcription start site region 123633 493 bp downstream
Tssr123634 transcription start site region 123634 1013 bp downstream
Tssr123635 transcription start site region 123635 1023 bp downstream
Tssr123636 transcription start site region 123636 1057 bp downstream
Tssr123637 transcription start site region 123637 1087 bp downstream
Tssr123638 transcription start site region 123638 1417 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory