rs51843093 SNP Detail

Summary

• ID
  rs51843093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183831611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAAAGTT GCTTGTGTCC
  CTGGAGGGAC ATTGACTTGA ATCATAGCCA GCATTGAATT AGTTCCTGGG TTTCTTTTAC
  AAATCTTAGG TGTTCTTGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AATAACTATA TTTGTGTCCT TCAGAGTCCT GTGATCAGAC TCAATGGATA ACACTAACAT
  Y
  TTAATATCAT AAAAGGTGAC TACCATGTGG GTGTTAGGAA CATAACCCAT GACCTATAAA
  AGAGCAGCAG GTAGTGGTCC TAACCACCGA GCCATCTTTC TAGACCCCAC ACTTGACTCT
  TAAATGTCTT GTAATAATAC AGGGTAACAG AAGCAAACTG CTTTTGAGTA AACATAGCAT
  CATTGATATA CATGGGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352493	NES15853278	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51843093					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352493	NES15853278	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183831611 () rs orientation: forward

Symbol	Name	Function Class
Rr425178	regulatory region 425178	1068 bp proximal