rs51843117 SNP Detail

Summary

• ID
  rs51843117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103254114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATGTGGG AGATCTAAAA
  TTAGGGAGTT ATTATGGGAC AGTCATTTAT CAAGGTTTTA AAATGATACT GAAAAAGATA
  CTAGTTAAGC CAGGAAGGGT AAACAAACTC AACTCAACAA GTGCCACATC TGAGCCTAGC
  CCTGGCTGCC ACTTGTAGGA TACCATCACT TATTCTTAGA TAGATGTTAG AAGAGACGAC
  R
  GCACAAATGC CATCATGTAT TTGCCATCTG TGGTTTTGCA ATATGGGCAA ACTTATCCAG
  AGACAGGAGG CCTCTTTGTA AACTGGAGGC TGCAGACTGA AGGGAGGGGT CCAATAGGAA
  AAAAGACAAA TGGGGCGTGA GTAGCTAGGG CATACATGGG GGTCTGTGCT GGAAAACAGA
  TCTGAGGGTG GCCTCTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52584127	NES15645640	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51843117					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52584127	NES15645640	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103254114 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	within coordinates
Rr404655	regulatory region 404655	1560 bp upstream
Rr510623	regulatory region 510623	1710 bp proximal
Tssr136772	transcription start site region 136772	1113 bp upstream
Tssr136773	transcription start site region 136773	1031 bp upstream
Tssr136774	transcription start site region 136774	963 bp upstream
Tssr136775	transcription start site region 136775	920 bp upstream
Tssr136776	transcription start site region 136776	898 bp upstream
Tssr136777	transcription start site region 136777	854 bp upstream
Tssr136778	transcription start site region 136778	1568 bp downstream