rs51843960 SNP Detail

Summary

• ID
  rs51843960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117012606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCTTGCA TTGGCAAGTG
  GTGTACAGGT GGCCAAGACG GCCATAACCA CGCCTAAGGA TACGTTTTCA TCACCCTAGT
  TACCTCCAGA AAAAGCCAGA CCCCCCCTAA CACAGGAAGA ACCCCAGTAA GGAACACACC
  AAGCTTGCAG CTCTCCCACT CCTAGGCTCC AGTAGACCCT AAGCTTGGAG ATTAGGGTGC
  R
  CAGACCCTGC ACGTGGACAC ACTTCCATGT CCAGTCGCCA GCACCGAGAA ACCTGAGCCT
  TACAAAGGTG ATCACAGCCA CTCGTGTTCC CCAGCAAACA CGCTCTAGCG CAGGGGAAGG
  CAGCCTCTCC CAGTCGTCCT CCCCCCGACC CCCGCACGCA CCTTCGTGTT GGCAGCGGGC
  CGTCCCAGCT CATACTTTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147285256	ENSMUSSNP4521505	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51843960					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117012606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	within coordinates
Gm22980	predicted gene, 22980	1247 bp upstream
Gm26330	predicted gene, 26330	120 bp upstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	897 bp downstream
Rr398411	regulatory region 398411	510 bp upstream
Rr598069	regulatory region 598069	824 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	835 bp upstream
Snord55	small nucleolar RNA, C/D box 55	362 bp downstream
Tssr38607	transcription start site region 38607	1571 bp downstream
Tssr42956	transcription start site region 42956	435 bp downstream
Tssr42957	transcription start site region 42957	666 bp downstream
Tssr42958	transcription start site region 42958	713 bp downstream
Tssr42959	transcription start site region 42959	735 bp downstream
Tssr42960	transcription start site region 42960	776 bp downstream
Tssr42961	transcription start site region 42961	790 bp downstream