rs51844612 SNP Detail

Summary

• ID
  rs51844612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121615098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGATAGCTC AATGAGTAAA GTGACTGCTG TAAAGTGTGA
  GGACGTGAGT TTGAATCCCC AGACCCAGGT AACACAGCAC ACGGTAGCAT GCCTATAATC
  Y
  GAGCACTCTT ACTTCAGGAT GGGAGACAGA GACAGGAAAA ATCCAGAAAC CCACCAGCCA
  GCTAGCCTGA CAGACAGTAG AGGACAGAAA GGGGGAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135729801	ENSMUSSNP6143008	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320906089	CHEV_3_121524367	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51844612					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121615098 () rs orientation: forward

Symbol	Name	Function Class
D3Mit347	DNA Segment, Chr 3 Massachusetts Institute of Technology 347	1616 bp proximal
Gm42776	predicted gene 42776	1995 bp downstream
Rr584177	regulatory region 584177	632 bp distal
Rr584178	regulatory region 584178	286 bp proximal