rs51845649 SNP Detail

Summary

• ID
  rs51845649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80709324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA TCTTGAGCTT TGCGATCATT
  Y
  CCCTGAAAAT CTGAGCACAC TAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135384868	ENSMUSSNP6748012	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320812637	CHEV_3_80605939	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51845649					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80709324 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13280	CpG island 13280			547 bp distal
Cpgi13281	CpG island 13281			493 bp proximal
Gm66511	predicted gene, 66511			within coordinates
Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)			Intron
				Noncoding-Transcript-Variant
Rr578665	regulatory region 578665			1758 bp distal
Rr578666	regulatory region 578666			808 bp proximal
Tssr29615	transcription start site region 29615			1485 bp downstream
Tssr29616	transcription start site region 29616			1462 bp downstream
Tssr33765	transcription start site region 33765			573 bp downstream
Tssr33766	transcription start site region 33766			587 bp downstream
Tssr33767	transcription start site region 33767			616 bp downstream
Tssr33768	transcription start site region 33768			634 bp downstream
Tssr33769	transcription start site region 33769			662 bp downstream
Tssr33770	transcription start site region 33770			728 bp downstream
Tssr33771	transcription start site region 33771			772 bp downstream