rs51846499 SNP Detail

Summary

• ID
  rs51846499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:138763595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGATTAA TATGTTCAAA GAGGTAGAAA CTGAACTAGG
  AACATTCTCA TAGAAAGGTA CTTGCCCTGT GGCAAGCACT AACTGATGTC TGCCAAGTCT
  Y
  CCAGCCTTTC TGATGGTCTT TGGCTCCTCA TCATGTTTTA TGTATGTGCT TTTTAAAACT
  CATTGTATGG ATCCCATAAA CGCTGTTCTT TACATTTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60805751	NES16482123	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C	C	C	C	C	C	C
ss145583008	ENSMUSSNP3920542	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51846499					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60805751	NES16482123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138763595 () rs orientation: forward

Symbol	Name	Function Class
Lhx9	LIM homeobox protein 9	Intron
Rr419772	regulatory region 419772	73 bp distal
Rr419773	regulatory region 419773	312 bp distal