rs51846893 SNP Detail

Summary

• ID
  rs51846893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96435542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAA CAACTACCTG TAATCCAGCT
  Y
  CAGGGGATCT GATGCTCTCC CCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132681519	ENSMUSSNP7116423	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51846893					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96435542 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1659 bp proximal
Rr252638	regulatory region 252638	943 bp distal
Rr252639	regulatory region 252639	1060 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	3 bp upstream
Tssr104544	transcription start site region 104544	657 bp upstream
Tssr104545	transcription start site region 104545	710 bp upstream
Tssr104546	transcription start site region 104546	718 bp upstream
Tssr104547	transcription start site region 104547	760 bp upstream
Tssr104548	transcription start site region 104548	854 bp upstream
Tssr104549	transcription start site region 104549	867 bp upstream
Tssr104550	transcription start site region 104550	925 bp upstream
Tssr104551	transcription start site region 104551	953 bp upstream
Tssr104552	transcription start site region 104552	974 bp upstream